IHC Microglia
Detect microglia soma in IHC-stained samples, segment branches, and identify primary and secondary branching points to quantify cell morphology and branching complexity.
microglia, central nervous system, peripheral nervous system, phagocytosis, astrocytes, branches
The IHC Microglia App detects microglia soma based on a specifc staining and further identifies branches as well as primary and secondary branching points. It outputs number and area of cells, number of primary and secondary branching points as well as area and lenght of the detected branches.
Original Image
Soma detection
primary branch point detection
Microglia detection
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We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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dendrites, neuron, axon, neuroscience, cell culture, primary dentrites, secondary dentrites, branches
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
