
IHC Microglia
Detect microglia soma in IHC-stained samples, segment branches, and identify primary and secondary branching points to quantify cell morphology and branching complexity.
single-cell analysis
neuroscience
dot detection
microglia, central nervous system, peripheral nervous system, phagocytosis, astrocytes, branches

The IHC Microglia App detects microglia soma based on a specifc staining and further identifies branches as well as primary and secondary branching points. It outputs number and area of cells, number of primary and secondary branching points as well as area and lenght of the detected branches.

Original Image

Soma detection

primary branch point detection

Microglia detection
dot detection

Blog Post
15 Feb, 2023
Applications of AI in Cell Segmentation
neuroscience

White Paper
30 Mar, 2026
Understanding NeuroCOVID-19: SARS-CoV-2 Disrupts Astrocyte Homeostatic Functions
single-cell analysis

White Paper
30 Mar, 2026
Understanding NeuroCOVID-19: SARS-CoV-2 Disrupts Astrocyte Homeostatic Functions
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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dendrites, neuron, axon, neuroscience, cell culture, primary dentrites, secondary dentrites, branches

Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.




