IF Brain App
Classify brain regions using an AI-based classifier and detect cellular phenotypes (e.g., astrocytes) based on markers, quantify tissue areas, total cells, and phenotype counts across regions.
brain, mouse, astrocytes, machine learning
The IF Brain App allows the classification (using the AI based classifier) of brain regions and detection of various cellular phenotypes, e.g. astrocytes, based on stained linage markers. The App outputs area (µm2) of detected tissues classes, count of total cells as well as in each detected area. Count and % of specific phenotype detected in total as well as in tissue classes.
Original Image
Nuclei and cell detection
Astrocyte detection
Vessel detection
Brain region
Metastructure detection
Webinar
19 Jan, 2024
Practical Approaches for Using Tissue Cytometry for Research Applications
White Paper
17 Oct, 2025
Integrative Multiomics Approach Unveils Systemic Dysfunction in Colorectal Cancer (CRC)
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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dendrites, neuron, axon, neuroscience, cell culture, primary dentrites, secondary dentrites, branches
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
