03. July 2024

What are the Benefits of High-Throughput Cytometers for Tissue Analysis?

The field of cytometry has witnessed significant advancements with the introduction of tissue cytometry and high-throughput cytometers, revolutionizing tissue analysis. When using high-throughput tissue cytometers, the number of tissue sections scanned and thereby the amount of gained data can be drastically increased. This technology can be also used combined with multispectral imaging, confocal imaging, and spatial tissue cytometry, and has paved the way for more complex, comprehensive and detailed insights into cellular phenotypes and spatial interactions within their natural environment.

  • Spatial tissue cytometry is a technique used to analyze the spatial distribution and characteristics of cellular phenotypes within intact, IF/IHC processed tissue samples. It involves using advanced imaging technologies (high-throughput, multispectral and confocal) and single cell image analysis, to visualize and analyze the distribution of different cell types within tissue samples. This technology is instrumental in investigating spatial relationships and associations between cells and metastructures within tissues, thereby enhancing our understanding of tissue architecture and cellular dynamics. It is widely used and valuable for studying the spatial organization of immune cells in various (cancerous) tissues, including colon, liver, kidney, and ovaries, and understanding their roles in health and disease.
  • Multispectral tissue cytometry represents a significant leap in whole slide imaging. By enhancing the number of stained biomarkers, this technology increases the identification of cellular phenotypes as well as tissue substructures (e.g. epithelium, tumor, stroma, blood vessels) and thereby increase the data output. This advancement is crucial for the detailed characterization of complex tissue samples and provides a more nuanced understanding of cellular interactions and functions. TissueFAXS SL Spectra offers high-thoughput multispectral imaging of up to 8 fluorescent channels for 120 slides, which enables the researchers to analyze a multitude of samples. 
  • High-throughput cytometers, such as the TissueFAXS SL systems, allow automated imaging of hundreds of slides with minimal user input. Additionally, systems such as TissueFAXS SL Q combine the benefits of high-throughput whole slide scanning and laser-free fast confocal imaging. Among the key advantages of this system are automated whole slide imaging with high magnification, streamlined scanning, and analysis workflows. These features facilitate remote consultation, whole tissue section analysis, and fully automated workflows, significantly improving efficiency and accuracy in tissue analysis.

Advantages of High-Throughput Cytometers

High-throughput cytometers have become indispensable in core facilities labs, thanks to their advanced technological capabilities that provide comprehensive and detailed insights into cellular and spatial interactions. Through their sophisticated design and functionality, these systems enable researchers and clinicians to conduct thorough and nuanced analyses of hundreds of tissue samples, which is pivotal for a better understanding of pathological processes. TissueGnostics offers modular high-throughput systems adaptable for specific research needs, such as confocal or multispectral imaging, which can be upgraded over time. 

  1. Enhanced Resolution and Accuracy: High-throughput cytometers offer superior resolution, allowing for the detailed visualization of cellular structures and the complex architecture of tissues. This high level of detail is crucial in identifying subtle changes in cells and tissues, often key indicators of disease progression or response to treatment. The resolution can be enhanced with confocal imaging, providing a more realistic view of the tissue architecture and cellular interactions.
  2. Increased Multiplexing Capabilities: One of the most significant advantages is the ability to analyze multiple biomarkers simultaneously. This multiplexing capability is facilitated by advanced imaging techniques, such as multispectral imaging, which can distinguish between numerous fluorescent signals and includes a spectral unmixing module for removing background and channel bleed through. This allows for the simultaneous detection and quantification of multiple biomarkers, leading to a more comprehensive understanding of cellular functions and interactions.
  3. Rapid Processing and Throughput: High-throughput cytometers are designed to process many samples in a shorter time frame without sacrificing accuracy.
  4. Automation and Workflow Efficiency: These systems have automated features that streamline the workflow, from acquisition to data analysis. Automated slide handling, focusing, tissue detection and scanning reduce manual labor and minimize the potential for errors, thereby increasing the reproducibility and reliability of results.
  5. Integration with Advanced Data Analysis Tools: High-throughput cytometers are often integrated with sophisticated data analysis software. This software utilizes algorithms for image processing and pattern recognition for further statistical analysis, enabling researchers to extract meaningful insights from complex datasets. This integration is crucial for translating raw data into actionable information in research and clinical diagnostics.
  6. Flexibility in Sample Types and Preparation: These cytometers are adept at handling various sample types, including frozen sections, formalin-fixed paraffin-embedded (FFPE) tissues, and TMAs. This versatility is critical for accommodating the diverse needs of research and clinical laboratories.

Embrace the Future of Tissue Analysis with TissueGnostics

Are you ready to elevate your research to the next level? Connect with us today. Explore our range of high-throughput cytometers and discover how our innovative technology can transform your approach to tissue analysis. Whether you're delving into complex research questions or seeking more accurate diagnostic methods, our expert team supports your journey towards excellence.

Join us in shaping the future of tissue analysis. Contact our specialists for a personalized consultation and learn how our solutions can be tailored to meet your specific needs.


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1020 Vienna, Austria
+43 1 216 11 90
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