Plant Root
Segment plant roots into epidermis, cortex, endodermis, pericycle, and stele; detect cells and quantify area and cell count per anatomical structure.
botanical research
botanical research, botany, plants, plant root, epidermis, cortex, endodermis, pericycle, vascular cylinder
The Plant Root App separates plant roots into the following anatomical structures: epidermis, cortex, endodermis, pericycle, and vascular cylinder (stele). Additionally, it identifies individual plant cells. The app outputs the total area of each anatomical structure and the number of detected plant cells.
Original Image
Anatomical Substructures
Detection of cells
botanical research
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
