Onion
Quantify onion epidermal cells and nuclei, classify cells into user-defined size ranges, and output total cell number, size (µm²), density, and counts per size category.
botanical research
botanical research, botany, plants, onion, epidermal cells
The Onion App quantifies onion epidermal cells and nuclei, and categorizes the cells into different size ranges (e.g., 0–500 µm², 500–1000 µm², 1000–1500 µm²). The size categories can be adjusted by the user. The output of the app includes the total number, size (µm²), and density of detected cells, as well as the number of detected cells per size category.
Original Image
Cell and nuclei detection
Gating based on cell sizes
botanical research
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
