IF Skeletal Muscle
Segment IF-stained skeletal muscle into muscle fibers and connective tissue, and measure fiber count, total tissue area, muscle fiber area, and connective tissue area.
skeletal muscle, muscle fibre detection, fluorescence
The IF Skeletal Muscle App allows the segmentation of skeletal muscle tissue sections into muscle fibres and connective tissue based on specific IF staining. As outcome parameters are provided such as number of muscle fibres, area of the total tissue, muscle fibres and connective tissue.
Original image
Myofibre detection
Lumen detection
Combined detection
Webinar
19 Jan, 2024
Practical Approaches for Using Tissue Cytometry for Research Applications
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
