IF C.Elegans
Detect fluorescently labeled C. elegans, classify worms into size classes, quantify area, length, width, and internal marker intensity, and measure marker intensity in defined proximity zones around each worm.
metastructures
dot detection
parasite, C. elegans, fluorescence
The IF C. Elegans App identifies fluorescence stained worms (e.g. c. elegans), categorizes them into different size classes, and detects additional markers within the worms (e.g. dot like markers). Further it analyses the environment arround the worms (e.g. 1000µm distance) spatially for marker intensity. The App outputs area (µm2), length (µm), width (µm), and marker intensity of the detected worms as well as marker intensity in proximity of the worms.
Image courtesy of Dr. Simona Ghenea, Institute of Biochemistry, Romanian Academy
Original image
Detection of big worms
Detection of small worms
Marker detection within worms
dot detection
Blog Post
15 Feb, 2023
Applications of AI in Cell Segmentation
metastructures
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
Related Apps
IF Dots
Detect dots-stainings per cell in up to four markers, segment cellular compartments, measure up to 20 intensity, statistic, and morphometric parameters, and quantify dot count, mean intensity, total area, intensity sum, and per-dot area/intensity per compartment.
cell culture, breast cancer, fluorescence, HER2
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
