Bone Mineralization
Separate Safranin O–stained bone into cartilage, mineralized cartilage, bone marrow, and mineralized bone, and measure TV, BV, MCV, CV, and BM.
Safranin O, bone mineralization, bone marrow, cartilage, TV, BV, MCV, CV, BM, brightfield
The Bone Mineralisation APP provides separation of ‘Safranin O’ stained bone tissue into the morphological substructures including cartilage, mineralized cartilage bone marrow and mineralized bone. Measurements assessed with this APP such as TV, BV, MCV (mineralized cartilage) CV (cartilage volume), bone marrow (BM).
Original image
Bone detection
Chondrocyte detection
Combined detection
White Paper
17 Jul, 2024
Algorithmic automation of bone research with StrataQuest
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
Related Apps
Bone Goldner
Detect mineralized bone and osteoid in Goldner-stained sections and measure BV, TV, OV, OV/BV, OV/TV, OS, BS, mean osteoid width, and mean osteoid thickness.
goldner staining, mineralized bone, osteoid, BV, TV, OV, OS, BS, brightfield
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
