IF Swiss Roll
The IF Swiss Roll App segments tissue into subclasses (e.g., mucosa, follicles, connective tissue), detects nuclei, and identifies phenotypes via IF stains.
mouse, colon, fluorescence, immune cell follicles
The IF Swiss Roll App allows for detection of the swiss roll, and the segmentation into different subclasses (mucosa, immune cell follicles, connective tissue, background). Further it detects nuclei and identifies phenotypes based on specific IF stains. The App outputs area (µm2) of detected tissues/tissue classes, count of total cells as well as in each detected area. Count and % of specific phenotype detected in total as well as in the tissue classes.
Priv.-Doz.Dr. Martin Schepelmann, Medical University of Vienna
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Tissue classification
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Nuclei and Phenotype detection
White Paper
17 Oct, 2025
Integrative Multiomics Approach Unveils Systemic Dysfunction in Colorectal Cancer (CRC)
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
